minimap2 binary package in Ubuntu Jammy armhf

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-03-29 00:19:04 UTC Published Ubuntu Jammy armhf release universe science Optional 2.24+dfsg-2
  • Published
  • Copied from ubuntu jammy-proposed armhf in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy armhf proposed universe science Optional 2.24+dfsg-2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2022-03-25 14:03:57 UTC Superseded Ubuntu Jammy armhf proposed universe science Optional 2.24+dfsg-1build1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of minimap2 2.24+dfsg-2 in ubuntu jammy PROPOSED
  • Published
  2022-03-17 09:18:58 UTC Superseded Ubuntu Jammy armhf proposed universe science Optional 2.24+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of minimap2 2.24+dfsg-1build1 in ubuntu jammy PROPOSED
  • Published
  2022-03-29 00:19:15 UTC Superseded Ubuntu Jammy armhf release universe science Optional 2.17+dfsg-12build3
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of minimap2 2.24+dfsg-2 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed armhf in Primary Archive for Ubuntu
  2022-03-30 00:10:09 UTC Deleted Ubuntu Jammy armhf proposed universe science Optional 2.17+dfsg-12build3
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2022-02-08 00:10:09 UTC Deleted Ubuntu Jammy armhf proposed universe science Optional 2.22+dfsg-3
  • Removed from disk .
  • Removal requested .
  • Deleted by Steve Langasek

    Temporarily removing for the python3.10 transition

  • Published
  2022-02-09 02:59:03 UTC Superseded Ubuntu Jammy armhf release universe science Optional 2.17+dfsg-12build2
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of minimap2 2.17+dfsg-12build3 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu hirsute-proposed armhf in Primary Archive for Ubuntu