hisat2 binary package in Ubuntu Jammy riscv64

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-11-04 14:34:08 UTC Published Ubuntu Jammy riscv64 release universe science Optional 2.2.1-3
  • Published
  • Copied from ubuntu jammy-proposed riscv64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy riscv64 proposed universe science Optional 2.2.1-3
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-04 14:35:47 UTC Superseded Ubuntu Jammy riscv64 release universe science Optional 2.2.1-2
  • Removed from disk .
  • Removal requested .
  • Superseded by riscv64 build of hisat2 2.2.1-3 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu hirsute-proposed riscv64 in Primary Archive for Ubuntu

Source package