multiqc 1.12+dfsg-1 (arm64 binary) in ubuntu kinetic
The sequencing of DNA or RNA with current high-throughput technologies
involves an array of tools and these are applied over a range of samples.
It is easy to loose oversight. And gathering the data and forwarding
them in a readable manner to the individuals who took the samples is
a challenge for a tool in itself. Well. Here it is.
MultiQC aggregates the output of multiple tools into a single report.
.
Reports are generated by scanning given directories for recognised log
files. These are parsed and a single HTML report is generated summarising
the statistics for all logs found. MultiQC reports can describe multiple
analysis steps and large numbers of samples within a single plot, and
multiple analysis tools making it ideal for routine fast quality control.
Details
- Package version:
- 1.12+dfsg-1
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
- multiqc_1.12+dfsg-1_all.deb (580.2 KiB)
Package relationships
- Depends on:
- fonts-glyphicons-halflings
- libjs-bootstrap
- libjs-jquery
- libjs-jquery-tablesorter
- libjs-jquery-ui
- python3
- python3-click
- python3-coloredlogs
- python3-distutils
- python3-future
- python3-humanfriendly (>= 8.1-2)
- python3-jinja2
- python3-lzstring
- python3-markdown
- python3-matplotlib
- python3-networkx
- python3-numpy
- python3-requests
- python3-rich
- python3-simplejson
- python3-spectra
- python3-yaml
- Recommends:
- Enhances:
- adapterremoval
- afterqc
- bamtools
- bbmap
- bcftools
- bcl2fastq
- biobambam2
- biobloomtools
- biscuit
- bismark
- bowtie
- bowtie2
- busco
- clipandmerge
- clusterflow
- conpair
- cutadapt
- damageprofiler
- dedup
- deeptools
- disambiguate
- dragen
- fastp
- fastq-screen
- fastqc
- featurecounts
- fgbio
- flash
- flexbar
- gatk
- goleft-indexcov
- happy
- hicexplorer
- hicpro
- hicup
- hisat2
- homer
- htseq
- interop
- ivar
- jellyfish
- kaiju
- kallisto
- kat
- kraken
- leehom
- longranger
- macs2
- malt
- methylqa
- minionqc
- mirtop
- mirtrace
- mosdepth
- mtnucratio
- multivcfanalyzer
- peddy
- phantompeakqualtools
- picard-tools
- preseq
- prokka
- pycoqc
- qorts
- qualimap
- quast
- rna-seqc
- rna-star
- rockhopper
- rsem
- rseqc
- salmon
- samblaster
- samtools
- sargasso
- seqyclean
- sexdeterrmine
- sickle
- skewer
- slamdunk
- snpeff
- snpsplit
- somalier
- sortmerna
- stacks
- supernova
- theta2
- tophat
- trimmomatic
- varscan2
- vcftools
- verifybamid