jellyfish 2.3.0-13 (armhf binary) in ubuntu kinetic
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
Details
- Package version:
- 2.3.0-13
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
armhf build of jellyfish 2.3.0-13 in ubuntu kinetic PROPOSED produced
these files:
- jellyfish_2.3.0-13_armhf.deb (726.9 KiB)
Package relationships
- Replaces:
- Breaks: