ariba 2.14.6+ds-3build1 (riscv64 binary) in ubuntu kinetic
ARIBA is a tool that identifies antibiotic resistance genes by running local
assemblies.
The input is a FASTA file of reference genes and paired sequencing reads. ARIBA
reports which of the reference genes were found, plus detailed information on
the quality of the assemblies and any variants between the sequencing reads
and the reference genes.
Details
- Package version:
- 2.14.6+ds-3build1
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
riscv64 build of ariba 2.14.6+ds-3build1 in ubuntu jammy PROPOSED produced
these files:
- ariba_2.14.6+ds-3build1_riscv64.deb (1.9 MiB)
Package relationships
- Depends on:
- bowtie2 (>= 2.1.0)
- cd-hit
- fastaq (>= 3.12.0)
- libc6 (>= 2.27)
- libfml0 (>= 0.1-4~)
- libgcc-s1 (>= 3.0)
- libminimap0 (>= 0.2)
- libstdc++6 (>= 5.2)
- mash
- mummer
- python3 (<< 3.11)
- python3 (>= 3.10~)
- python3
- python3-biopython
- python3-bs4
- python3-dendropy
- python3-matplotlib
- python3-pymummer (>= 0.10.2)
- python3-pysam (>= 0.9.1)
- python3-tk
- zlib1g (>= 1:1.1.4)
- Suggests:
