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velvet (0.7.56~nozlibcopy-1) unstable; urgency=low
* New upstream version.
* Repackaged the upstream directory to remove the convenience copy
of the zlib. Documented this in ‘debian/README.source’.
Closes: #561433.
* Updated debian/copyright.
* Added ‘include_debians_zlib.patch’ to enforce the use of
/usr/include/zlib.h. This patch is applied using CDBS, see
‘debian/rules’ and ‘debian/README.source’.
* Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and
centralised upstream-specific information there.
-- Ubuntu Archive Auto-Sync <email address hidden> Tue, 02 Feb 2010 00:01:30 +0000
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velvet (0.7.55-1) unstable; urgency=low
* New upstream version
velvet (0.7.53-1) unstable; urgency=low
* New upstream release:
- Ignored reads in Pebble corrected
- Added automatic measure of median coverage and median insert length
- Updated manual to cover the above
velvet (0.7.52-1) unstable; urgency=low
* New upstream release:
V 0.7.51
- Small parsing bug
- Correction to the observed-insert-length script
- Verified strncpy calls
- NCBI friendly 10bp N-gaps
V 0.7.52
- Crashing bug when parsing fa.gz files
- Crashing bug with tiny Graph files
- Bug when loading FASTA files with short lines
- Corrected snp_view.pl script to write reverse strand reads in
snp_view_reads file
- Corrected snp_view.pl script to behave better near the edges of contigs
- Updated observed_insert_length to compute the standard deviation of
the set
- Corrected observed_insert_length script so that it does not crash on
empty libraries
- Crashing bug when providing an odd number of paired reads
- Mapping bug of reads during tour bus correction
* Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as
0.7.50-1 was really uploaded and accepted by the archive.
velvet (0.7.50-1) unstable; urgency=low
* New upstream release:
V 0.7.49
- Added the optional output of unused reads
- Added David Studholme's FastA -> AGP script
V 0.7.50
- Added the extractContigReads script
- Updated the FastA -> AGP script
- Added the observed-insert-length script
- Small parsing bug in simplified read import
* Incremented Standards-Version in debian/control to reflect conformance
with Policy 3.8.3 (no changes needed).
velvet (0.7.48-1) unstable; urgency=low
* New upstream release:
- Accelerated concatenation (pre-graph and graph)
- Unlimited contig size
- Bug in parsing FASTA files with very long lines
- Parsing bug in snp_view.pl script
velvet (0.7.47-1) unstable; urgency=low
* New upstream release correcting bugs and enhancing documentation.
* Multi-Arch support (‘foreign’) in debian/control.
* Corrected debian/install to avoid ugly ‘contrib/contrib’ location.
velvet (0.7.44-1) unstable; urgency=low
* New upstream release.
* Added bibliographic information in BibTeX format in debian/references.
* debian/rules: touch zlib to avoid third-party zlib to be built.
* Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
variables in debian/rules is enough to build dynamically on Debian's
zlib.
* Removed the quilt patch system (debian/control, debian/README.source
debian/rules).
* Incremented Standards-Version in debian/control to reflect conformance
with Policy 3.8.2 (no changes needed).
* Corrected the installation of files that were moved from the
‘third-party’ directory to the ‘contrib’ directory.
* Experimentation on debian/copyright.
velvet (0.7.37-1) unstable; urgency=low
* New upstream release.
- Small formatting change to error messages
- K > 31 now possible
- --help option corrected for velvetg
- Acceleration of k-mer operations (comparable to 64bit int performance)
- Fixed variable lengths
- Reordered struct declaration for more efficent memory alignment
* debian/rules:
- Restored manpage generation for velvetg*.
- Added forgotten CFLAGS for the colorspace building.
-- Ubuntu Archive Auto-Sync <email address hidden> Fri, 06 Nov 2009 10:39:31 +0000
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velvet (0.7.34-1) unstable; urgency=low
* New upstream release correcting multiple bugs, changing the stats output,
allowing optional scaffolding and multiple rounds of Pebble.
* Added the programs velveth_de and velvetg_de to the package in /usr/bin,
and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
/usr/share/velvet (debian/rules, debian/install).
* Refreshed debian/copyright.
* Temporarly disabled the manpage generation of velvetg* because the --help
option is not available (debian/rules).
-- Ubuntu Archive Auto-Sync <email address hidden> Mon, 15 Jun 2009 11:18:50 +0100