de novo assembler for single molecule sequencing reads using repeat graphs

 Flye is a de novo assembler for single molecule sequencing reads, such
 as those produced by PacBio and Oxford Nanopore Technologies. It is
 designed for a wide range of datasets, from small bacterial projects to
 large mammalian-scale assemblies. The package represents a complete
 pipeline: it takes raw PacBio / ONT reads as input and outputs polished
 contigs. Flye also has a special mode for metagenome assembly.