spades binary package in Ubuntu Lunar amd64

 The SPAdes – St. Petersburg genome assembler is intended for both
 standard isolates and single-cell MDA bacteria assemblies. It works
 with Illumina or IonTorrent reads and is capable of providing hybrid
 assemblies using PacBio and Sanger reads. You can also provide
 additional contigs that will be used as long reads.
 .
 This package provides the following additional pipelines:
  * metaSPAdes – a pipeline for metagenomic data sets
  * plasmidSPAdes – a pipeline for extracting and assembling plasmids
    from WGS data sets
  * metaplasmidSPAdes – a pipeline for extracting and assembling
    plasmids from metagenomic data sets
  * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
  * truSPAdes – a module for TruSeq barcode assembly
  * biosyntheticSPAdes – a module for biosynthetic gene cluster
    assembly with paired-end reads
 .
 SPAdes provides several stand-alone binaries with relatively simple
 command-line interface: k-mer counting (spades-kmercounter), assembly
 graph construction (spades-gbuilder) and long read to graph aligner
 (spades-gmapper).

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-11-23 19:38:58 UTC Published Ubuntu Lunar amd64 release universe science Optional 3.15.5+dfsg-2
  • Published
  • Copied from ubuntu lunar-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Lunar amd64 proposed universe science Optional 3.15.5+dfsg-2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to lunar

  • Published
  2022-11-23 19:39:45 UTC Superseded Ubuntu Lunar amd64 release universe science Optional 3.15.5+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of spades 3.15.5+dfsg-2 in ubuntu lunar PROPOSED
  • Published
  • Copied from ubuntu kinetic-proposed amd64 in Primary Archive for Ubuntu

Source package