centrifuge binary package in Ubuntu Lunar armhf
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2022-11-10 19:34:01 UTC | Published | Ubuntu Lunar armhf | release | universe | science | Optional | 1.0.3-11 | ||
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Deleted | Ubuntu Lunar armhf | proposed | universe | science | Optional | 1.0.3-11 | |||
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2022-11-10 19:34:25 UTC | Superseded | Ubuntu Lunar armhf | release | universe | science | Optional | 1.0.3-10 | ||
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