Binary package “megadepth” in ubuntu mantic
computes coverage from BigWig and BAM sequencing files
A major concern for the interpretation of DNA and RNA (!) sequencing is
the number of reads that cover a particular area. This package
has interesting statistics for the distinction of coding and non-coding
parts of the genome and knows how to interpret transcripts that
span multiple exons.
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This package is a successor of the program 'bamcount'.