structural variant calling

 TIDDIT is a tool to used to identify chromosomal rearrangements using
 Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter-
 chromosomal translocations, deletions, tandem-duplications and
 inversions, using supplementary alignments as well as discordant pairs.
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 TIDDIT has two analysis modules. The sv mode, which is used to search
 for structural variants. And the cov mode that analyse the read depth of
 a bam file and generates a coverage report.