ivar binary package in Ubuntu Mantic amd64

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
 .
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-10-04 16:31:48 UTC Published Ubuntu Mantic amd64 release universe science Optional 1.4.2+dfsg-2ubuntu1
  • Published
  • Copied from ubuntu mantic-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Mantic amd64 proposed universe science Optional 1.4.2+dfsg-2ubuntu1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to mantic

  • Published
  2023-10-04 16:31:54 UTC Superseded Ubuntu Mantic amd64 release universe science Optional 1.3.1+dfsg-7
  • Removal requested .
  • Superseded by amd64 build of ivar 1.4.2+dfsg-2ubuntu1 in ubuntu mantic PROPOSED
  • Published
  • Copied from ubuntu lunar-proposed amd64 in Primary Archive for Ubuntu

Source package