libseqlib2 binary package in Ubuntu Mantic amd64
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
|---|---|---|---|---|---|---|---|---|---|
| 2023-07-20 02:08:45 UTC | Published | Ubuntu Mantic amd64 | release | universe | libs | Optional | 1.2.0+dfsg-10 | ||
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| Deleted | Ubuntu Mantic amd64 | proposed | universe | libs | Optional | 1.2.0+dfsg-10 | |||
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| 2023-07-20 02:09:16 UTC | Superseded | Ubuntu Mantic amd64 | release | universe | libs | Optional | 1.2.0+dfsg-9 | ||
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