hhsuite binary package in Ubuntu Mantic arm64
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
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This package contains HHsearch and HHblits among other programs and utilities.
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HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
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HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2023-08-26 14:05:11 UTC | Published | Ubuntu Mantic arm64 | release | universe | science | Extra | 3.3.0+ds-8 | ||
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Deleted | Ubuntu Mantic arm64 | proposed | universe | science | Extra | 3.3.0+ds-8 | |||
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2023-08-26 14:21:50 UTC | Superseded | Ubuntu Mantic arm64 | release | universe | science | Extra | 3.3.0+ds-7 | ||
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