Change logs for python-cogent source package in Natty

python-cogent (1.5-1) unstable; urgency=low

  * Bumped standard to 3.9.1, no changes required.
  * New upstream version.
    - major additions to Cookbook
    - added AlleleFreqs attribute to ensembl Variation objects.
    - added getGeneByStableId method to genome objects.
    - added Introns attribute to Transcript objects and an Intron class.
    - added Mann-Whitney test and a Monte-Carlo version
    - exploratory and confirmatory period estimation techniques (suitable for
      symbolic and continuous data)
    - Information theoretic measures (AIC and BIC) added
    - drawing of trees with collapsed nodes
    - progress display indicator support for terminal and GUI apps
    - added parser for illumina HiSeq2000 and GAiix sequence files as 
      cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
    - added parser to FASTQ files, one of the output options for illumina's
      workflow, also added cookbook demo.
    - added functionality for parsing of SFF files without the Roche tools in
      cogent.parse.binary_sff
    - thousand fold performance improvement to nmds
    - >10-fold performance improvements to some Table operations
 -- Ubuntu Archive Auto-Sync <email address hidden>   Mon,  06 Dec 2010 13:59:21 +0000

python-cogent (1.4.1-1.2) unstable; urgency=low

  * Non-maintainer upload.
  * Mark package as auto-buildable

python-cogent (1.4.1-1.1) unstable; urgency=low

  * Non-maintainer upload.
  * Replace build-dependency on python2.5-dev with python-all-dev. Closes: #596325.

python-cogent (1.4.1-1) unstable; urgency=low

  * Initial release (Closes: #587161)
 -- Ubuntu Archive Auto-Sync <email address hidden>   Fri,  05 Nov 2010 13:53:52 +0000