Binary package “beagle” in ubuntu noble
Genotype calling, genotype phasing and imputation of ungenotyped markers
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
markers, and identity-by-descent segment detection. Genotypic imputation works
on phased haplotypes using a Li and Stephens haplotype frequency model.
Beagle also implements the Refined IBD algorithm for detecting
homozygosity-