Binary package “ivar-doc” in ubuntu noble
functions broadly useful for viral amplicon-based sequencing (documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
.
This package contains the html documentation for ivar.
Source package
Published versions
- ivar-doc 1.4.2+dfsg-2ubuntu1 in amd64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in amd64 (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in amd64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in arm64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in arm64 (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in arm64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in armhf (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in armhf (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in armhf (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in i386 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in i386 (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in i386 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in ppc64el (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in ppc64el (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in ppc64el (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in riscv64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in riscv64 (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in riscv64 (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu1 in s390x (Release)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in s390x (Proposed)
- ivar-doc 1.4.2+dfsg-2ubuntu2 in s390x (Release)