Binary package “proftmb” in ubuntu noble
per-residue prediction of bacterial transmembrane beta barrels
proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative
bacteria.
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For each query protein, proftmb provides both a Z-value indicating that the
protein actually contains a membrane barrel, and a four-state per-residue
labeling of upward- and downward-facing strands, periplasmic hairpins and
extracellular loops.