augur 23.1.0-1 (amd64 binary) in ubuntu noble
The nextstrain project is an attempt to make flexible informatic
pipelines and visualization tools to track ongoing pathogen evolution as
sequence data emerges. The nextstrain project derives from nextflu,
which was specific to influenza evolution.
.
nextstrain is comprised of three components:
.
* fauna: database and IO scripts for sequence and serological data
* augur: informatic pipelines to conduct inferences from raw data
* auspice: web app to visualize resulting inferences
Details
- Package version:
- 23.1.0-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of augur 23.1.0-1 in ubuntu noble PROPOSED produced
these files:
- augur_23.1.0-1_all.deb (175.7 KiB)
Package relationships
- Depends on:
- fasttree
- mafft
- python3
- python3-bcbio-gff
- python3-biopython
- python3-boto3
- python3-cvxopt
- python3-dendropy
- python3-importlib-resources
- python3-ipdb
- python3-isodate
- python3-jsonschema
- python3-matplotlib
- python3-networkx
- python3-numpy
- python3-packaging
- python3-pandas
- python3-pyfastx
- python3-schedule
- python3-scipy
- python3-seaborn
- python3-treetime (>= 0.9.4)
- python3-xopen (>= 1.7.0-1~)
- python3-zstandard
- raxml
- seqmagick
- vcftools
- Recommends: