mosdepth 0.3.6+ds-1 (arm64 binary) in ubuntu noble

 Many small reads are produced by high-throughput "next generation"
 sequencing technologies. The final sequence is derived from how
 these reads are overlapping towards a consensus.
 The more reads are covering/confirming parts of a nucleotide seq,
 the higher the confidence is. Too many reads would be indicative
 of e.g. repeats in the genome.
 .
 mosdepth can output:
  * per-base depth about 2x as fast samtools depth--about 25 minutes
     of CPU time for a 30X genome.
  * mean per-window depth given a window size--as would be used for
     CNV calling.
  * the mean per-region given a BED file of regions.
  * a distribution of proportion of bases covered at or above a given
     threshold for each chromosome and genome-wide.
  * quantized output that merges adjacent bases as long as they fall
     in the same coverage bins e.g. (10-20)
  * threshold output to indicate how many bases in each region are
     covered at the given thresholds.
 when appropriate, the output files are bgzipped and indexed for ease
 of use.

Details

Package version:
0.3.6+ds-1
Source:
mosdepth 0.3.6+ds-1 source package in Ubuntu
Status:
Published
Component:
universe
Priority:
Optional

Package relationships