Ubuntu

tophat-recondition binary package in Ubuntu Noble arm64

  1. Noble (24.04)
  2. arm64
  3. tophat-recondition

 tophat-recondition is a post-processor for TopHat unmapped reads
 (contained in unmapped.bam), making them compatible with downstream
 tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It
 also works around bugs in TopHat:
 .
  * the "mate is unmapped" SAM flag is not set on any reads in the
    unmapped.bam file (TopHat issue #3)
  * the mapped mate of an unmapped read can be absent from
    accepted_hits.bam, creating a mismatch between the file and the unmapped
    read's flags (TopHat issue #16)

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-10-23 22:30:24 UTC Published Ubuntu Noble arm64 release universe science Optional 1.4-3
  • Published
  • Copied from ubuntu groovy-proposed amd64 in Primary Archive for Ubuntu

Source package