pyfastx binary package in Ubuntu Noble s390x

 The pyfastx is a lightweight Python C extension that enables users to randomly
 access to sequences from plain and gzipped FASTA/Q files. This module aims to
 provide simple APIs for users to extract sequence from FASTA and reads from
 FASTQ by identifier and index number. The pyfastx will build indexes stored in
 a sqlite3 database file for random access to avoid consuming excessive amount
 of memory. In addition, the pyfastx can parse standard (sequence is spread
 into multiple lines with same length) and nonstandard (sequence is spread into
 one or more lines with different length) FASTA format.
 .
 It features:
 .
  * a single file for the Python extension;
  * lightweight, memory efficient FASTA/Q file parsing;
  * fast random access to sequences from gzipped FASTA/Q file;
  * sequences reading from FASTA file line by line;
  * N50 and L50 calculation of sequences in FASTA file;
  * GC content and nucleotides composition calculation;
  * reverse, complement and antisense sequences extraction;
  * excellent compatibility: support for parsing nonstandard FASTA file;
  * support for FASTQ quality score conversion;
  * a command line interface for splitting FASTA/Q file.
 .
 This package provides the command line interface.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-12-13 21:38:13 UTC Published Ubuntu Noble s390x release universe science Optional 2.0.2-2
  • Published
  • Copied from ubuntu noble-proposed s390x in Primary Archive for Ubuntu
  Deleted Ubuntu Noble s390x proposed universe science Optional 2.0.2-2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2023-12-13 21:42:28 UTC Superseded Ubuntu Noble s390x release universe science Optional 2.0.2-1
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of pyfastx 2.0.2-2 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu noble-proposed s390x in Primary Archive for Ubuntu
  2024-01-13 18:10:15 UTC Deleted Ubuntu Noble s390x proposed universe science Optional 2.0.2-1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2023-12-08 00:19:15 UTC Superseded Ubuntu Noble s390x release universe science Optional 2.0.1-1build1
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of pyfastx 2.0.2-1 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu noble-proposed s390x in Primary Archive for Ubuntu
  2024-01-13 12:10:15 UTC Deleted Ubuntu Noble s390x proposed universe science Optional 2.0.1-1build1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2023-11-19 15:19:56 UTC Superseded Ubuntu Noble s390x release universe science Optional 2.0.1-1
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of pyfastx 2.0.1-1build1 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu noble-proposed s390x in Primary Archive for Ubuntu
  2024-01-13 00:10:16 UTC Deleted Ubuntu Noble s390x proposed universe science Optional 2.0.1-1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2023-10-29 12:21:10 UTC Superseded Ubuntu Noble s390x release universe science Optional 1.1.0-1
  • Removal requested .
  • Superseded by s390x build of pyfastx 2.0.1-1 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu mantic-proposed s390x in Primary Archive for Ubuntu

Source package