tophat-recondition binary package in Ubuntu Oracular amd64
tophat-recondition is a post-processor for TopHat unmapped reads
(contained in unmapped.bam), making them compatible with downstream
tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It
also works around bugs in TopHat:
.
* the "mate is unmapped" SAM flag is not set on any reads in the
unmapped.bam file (TopHat issue #3)
* the mapped mate of an unmapped read can be absent from
accepted_
read's flags (TopHat issue #16)
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
---|---|---|---|---|---|---|---|---|---|
2024-04-29 18:55:16 UTC | Published | Ubuntu Oracular amd64 | release | universe | science | Optional | 1.4-3 | ||
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