Binary package “ampliconnoise” in ubuntu precise
Programs for the removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
.
Pyronoise - does flowgram-based clustering to spot misreads
SeqNoise - removes PCR point mutations
Perseus - removes PCR chimeras without the need for a set of reference
sequences
.
Previously there was a standalone "Pyronoise" by the same authors and
this package includes an updated version. There is also a "Denoiser"
in Qiime which is related but distinct.
.
Removing Noise From Pyrosequenced Amplicons
Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh
BMC Bioinformatics 2011, 12:38doi:
