ncbi-blast+ 2.2.25-6 source package in Ubuntu
Changelog
ncbi-blast+ (2.2.25-6) unstable; urgency=low * debian/control: Luca Capello <email address hidden>, fix reference for legacy_blast (Closes: #642986). + add a new line to separate the actual description from usage instruction in the long Description:. * debian/rules: add gene_info_reader binary in package ncbi-blast+ (2.2.25-5) unstable; urgency=low * Team upload. * debian/patches/hurd_fixes: further patch configure(.ac) to reflect -Wl,rpath,... support. (Closes: #629656.) * debian/patches/fix_lib_deps: link makembindex and srsearch against libxconnect rather than libconnect for consistency with libblast, which uses the former for consistency with other projects. ncbi-blast+ (2.2.25-4) unstable; urgency=low [ Aaron M. Ucko ] * Team upload. * debian/patches/support_other_cpus: belatedly add a descriptive header. * debian/patches/hurd_fixes: new; fix hurd-specific issues. (In conjunction with the following change, finally closes: #629656.) * debian/control: - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180. - Declare both binary packages as Multi-Arch: foreign. * debian/patches/fix_lib_deps: new; ensure that all libraries link against all direct dependencies. (Break the dependency loop between libxblast and libxalgoblastdbindex by having the former provide only the C++ BLAST API, leaving the C core only in libblast.) (Closes: #633567.) * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the board (as it is now safe to do so) and adding -Wl,--enable-new-dtags to allow LD_LIBRARY_PATH to override the private rpath. * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries on multiarch systems (courtesy of overzealous logic to ensure executables will be able to find libstdc++.) [ Andreas Tille ] * Enhances: t-coffee (as stated in tasks file) -- Julian Taylor <email address hidden> Mon, 24 Oct 2011 09:43:19 +0000
Upload details
- Uploaded by:
- Julian Taylor
- Uploaded to:
- Precise
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
ncbi-blast+_2.2.25.orig.tar.gz | 11.4 MiB | b0c57e5ab1a69d74131a090182ea730cdbe23adeca241e466264789226b145a3 |
ncbi-blast+_2.2.25-6.debian.tar.gz | 16.5 KiB | d47af4e713ef0dfabf2f5e672eea2142d632e5753d6ee734c120f5b18bf61002 |
ncbi-blast+_2.2.25-6.dsc | 2.2 KiB | 053eea46b22f29c89dad7734ae4e94399f9e6cc19970959df7bc732e36964d7f |
Available diffs
- diff from 2.2.25-3ubuntu1 to 2.2.25-6 (10.0 KiB)
Binary packages built by this source
- ncbi-blast+: next generation suite of BLAST sequence search tools
The Basic Local Alignment Search Tool (BLAST) is the most widely
used sequence similarity tool. There are versions of BLAST that
compare protein queries to protein databases, nucleotide queries
to nucleotide databases, as well as versions that translate nucleotide
queries or databases in all six frames and compare to protein databases
or queries.
PSI-BLAST produces a position-specific- scoring- matrix (PSSM) starting
with a protein query, and then uses that PSSM to perform further searches.
It is also possible to compare a protein or nucleotide query to a
database of PSSM’s.
The NCBI supports a BLAST web page at blast.ncbi.nlm.nih. gov as well as
a network service.
- ncbi-blast+-legacy: NCBI Blast legacy call script
This package adds some fake scripts to call NCBI+ programs
with the NCBI blast command line. It makes use of the
legacy_blast script in ncbi-blast+ package.
.
To use those scripts, /usr/share/ncbi-blast+ /bin must be added
to the PATH.