qiime binary package in Ubuntu Trusty armhf

 QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
 microbial community analysis that integrates many third party tools which
 have become standard in the field. A standard QIIME analysis begins with
 sequence data from one or more sequencing platforms, including
  * Sanger,
  * Roche/454, and
  * Illumina GAIIx.
 With all the underlying tools installed,
 of which not all are yet available in Debian (or any other Linux
 distribution), QIIME can perform
  * library de-multiplexing and quality filtering;
  * denoising with PyroNoise;
  * OTU and representative set picking with uclust, cdhit, mothur, BLAST,
    or other tools;
  * taxonomy assignment with BLAST or the RDP classifier;
  * sequence alignment with PyNAST, muscle, infernal, or other tools;
  * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools;
  * alpha diversity and rarefaction, including visualization of results,
    using over 20 metrics including Phylogenetic Diversity, chao1, and
    observed species;
  * beta diversity and rarefaction, including visualization of results,
    using over 25 metrics including weighted and unweighted UniFrac,
    Euclidean distance, and Bray-Curtis;
  * summarization and visualization of taxonomic composition of samples
    using pie charts and histograms
 and many other features.
 .
 QIIME includes parallelization capabilities for many of the
 computationally intensive steps. By default, these are configured to
 utilize a mutli-core environment, and are easily configured to run in
 a cluster environment. QIIME is built in Python using the open-source
 PyCogent toolkit. It makes extensive use of unit tests, and is highly
 modular to facilitate custom analyses.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2013-12-30 10:53:17 UTC Published Ubuntu Trusty armhf release universe science Extra 1.8.0+dfsg-2
  • Published
  • Copied from ubuntu trusty-proposed armhf in Primary Archive for Ubuntu
  Deleted Ubuntu Trusty armhf proposed universe science Extra 1.8.0+dfsg-2
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2013-12-30 10:53:38 UTC Superseded Ubuntu Trusty armhf release universe science Extra 1.8.0+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of qiime 1.8.0+dfsg-2 in ubuntu trusty PROPOSED
  • Published
  • Copied from ubuntu trusty-proposed armhf in Primary Archive for Ubuntu
  2013-12-31 12:10:14 UTC Deleted Ubuntu Trusty armhf proposed universe science Extra 1.8.0+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2013-12-21 18:08:43 UTC Superseded Ubuntu Trusty armhf release universe science Extra 1.7.0+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of qiime 1.8.0+dfsg-1 in ubuntu trusty PROPOSED
  • Published
  • Copied from ubuntu saucy-proposed armhf in Primary Archive for Ubuntu

Source package