Binary package “picard-tools” in ubuntu xenial
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. Picard Tools includes these
utilities to manipulate SAM and BAM files:
BamToBfq IlluminaBasecal
BuildBamIndex MarkDuplicates
CalculateHsMetrics MeanQualityByCycle
CleanSam MergeBamAlignment
CollectAlignme
CollectGcBiasM
CollectInsertS
CollectRnaSeqM
CompareSAMs RevertSam
CreateSequence
ExtractIllumin
EstimateLibrar
FastqToSam ValidateSamFile
FixMateInformation ViewSam
