Binary package “python3-pyfaidx” in ubuntu xenial
efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides the Python 3 modules to access fasta files.
Source package
Published versions
- python3-pyfaidx 0.4.5.2-1 in amd64 (Proposed)
- python3-pyfaidx 0.4.5.2-1 in amd64 (Release)
- python3-pyfaidx 0.4.5.2-1 in arm64 (Proposed)
- python3-pyfaidx 0.4.5.2-1 in arm64 (Release)
- python3-pyfaidx 0.4.5.2-1 in armhf (Proposed)
- python3-pyfaidx 0.4.5.2-1 in armhf (Release)
- python3-pyfaidx 0.4.5.2-1 in i386 (Proposed)
- python3-pyfaidx 0.4.5.2-1 in i386 (Release)
- python3-pyfaidx 0.4.5.2-1 in powerpc (Proposed)
- python3-pyfaidx 0.4.5.2-1 in powerpc (Release)
- python3-pyfaidx 0.4.5.2-1 in ppc64el (Proposed)
- python3-pyfaidx 0.4.5.2-1 in ppc64el (Release)
- python3-pyfaidx 0.4.5.2-1 in s390x (Proposed)
- python3-pyfaidx 0.4.5.2-1 in s390x (Release)