libfreecontact-perl 0.08-4build1 (i386 binary) in ubuntu xenial
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Perl binding.
Details
- Package version:
- 0.08-4build1
- Status:
- Published
- Component:
- universe
- Priority:
- Extra
Downloadable files
- libfreecontact-perl_0.08-4build1_i386.deb (73.1 KiB)
Package relationships
- Depends on:
- libc6 (>= 2.4)
- libfreecontact0v5
- libgcc1 (>= 1:3.0)
- perl (>= 5.22.1-1)
- perlapi-5.22.1