concavity binary package in Ubuntu Xenial ppc64el

 ConCavity predicts protein ligand binding sites by combining evolutionary
 sequence conservation and 3D structure.
 .
 ConCavity takes as input a PDB format protein structure and optionally
 files that characterize the evolutionary sequence conservation of the chains
 in the structure file.
 .
 The following result files are produced by default:
  * Residue ligand binding predictions for each chain (*.scores).
  * Residue ligand binding predictions in a PDB format file (residue
    scores placed in the temp. factor field, *_residue.pdb).
  * Pocket prediction locations in a DX format file (*.dx).
  * PyMOL script to visualize the predictions (*.pml).
 .
 ConCavity has many features. The default run of concavity is equivalent to
 ConCavity in the paper:
 'Capra JA, Laskowski RA, Thornton JM, Singh M, and Funkhouser TA(2009)
 Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence
 Conservation and 3D Structure. PLoS Comput Biol, 5(12).'.
 .
 score_conservation(1) from the conservation-code package can be used to
 calculate evolutionary sequence conservation for concavity.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2016-01-08 19:38:31 UTC Published Ubuntu Xenial ppc64el release universe science Extra 0.1+dfsg-1
  • Published
  • Copied from ubuntu xenial-proposed ppc64el in Primary Archive for Ubuntu
  Deleted Ubuntu Xenial ppc64el proposed universe science Extra 0.1+dfsg-1
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2016-01-08 19:42:08 UTC Superseded Ubuntu Xenial ppc64el release universe science Extra 0.1-2
  • Removal requested .
  • Superseded by ppc64el build of concavity 0.1+dfsg-1 in ubuntu xenial PROPOSED
  • Published
  • Copied from ubuntu trusty-release ppc64el in Primary Archive for Ubuntu