Debian Med

PPA description

Packages in Debian make it nicely to the very latest of Ubuntu, if there is not a freeze, but not necessarily into the various production environments that one would like to see them in. So, this PPA is thought to perform a bit of the role that we consider to take for Debian. But it is not "just another backports". Also the packages that have not yet left experimental shall be found here.

This PPA contains packages related to medicine and bio-informatics.

Adding this PPA to your system

You can update your system with unsupported packages from this untrusted PPA by adding ppa:debian-med/ppa to your system's Software Sources. (Read about installing)

sudo add-apt-repository ppa:debian-med/ppa
sudo apt-get update
Technical details about this PPA

This PPA can be added to your system manually by copying the lines below and adding them to your system's software sources.

Display sources.list entries for:
Signing key:
1024R/A94C3BE9F39B6B77F7C695E15F8D4E5375DD1BE7 (What is this?)

For questions and bugs with software in this PPA please contact Debian Med.

PPA statistics

14 updates added during the past month.
View package details

Overview of published packages

167 of 67 results
Package Version Uploaded by
art-nextgen-simulation-tools 3.19.15+dfsg-0~ubuntu14.04~ppa1 Andreas Tille (2016-02-17)
artfastqgenerator 0.0.20150519-1~ubuntu14.04~ppa1 Andreas Tille (2016-02-16)
bambamc 0.0.50-1ubuntu1 Andreas Tille (2015-03-24)
bamtools 2.3.0+dfsg-2~ubuntu14.04.1~ppa1 Michael R. Crusoe (2014-09-26)
bcftools 1.3.1-1~ubuntu14.04~ppa1 Andreas Tille (2016-07-01)
beast-mcmc 1.8.2~754b844-1ubuntu1 Andreas Tille (2015-07-20)
brig 0.95+dfsg-1~ubuntu14.04~ppa1 Andreas Tille (2016-02-18)
bwa 0.7.12-1ubuntu1 Andreas Tille (2015-03-24)
cgview 0.0.20100111-1~ubuntu14.04~ppa1 Andreas Tille (2016-02-18)
cmake 3.2.2-2ubuntu1 Andreas Tille (2015-07-15)
cython 0.23.4+git4-g7eed8d8-1~ubuntu14.04~ppa1 Andreas Tille (2016-06-30)
d-shlibs 0.58~ubuntu14.04.1~ppa1 Michael R. Crusoe (2014-09-26)
ecopcr 0.5.0-1ubuntu1 Andreas Tille (2015-06-25)
eigensoft 6.1.4+dfsg-1ubuntu2 Steffen Möller (2018-02-11)
fastqc 0.11.5+dfsg-6ubuntu2 Tony Travis (2018-02-11)
genometools 1.5.9+ds-2~ubuntu14.04~ppa1 Sascha Steinbiss (2016-07-29)
htsjdk 1.138+dfsg.1-4~ubuntu14.04~ppa1 Andreas Tille (2016-08-01)
htslib 1.3.1-1~ubuntu14.04~ppa1 Andreas Tille (2016-06-30)
hyphy 2.2.6+dfsg-1ubuntu1 Andreas Tille (2015-09-30)
jam-lib 0.1.20140824-1ubuntu1 Andreas Tille (2015-07-20)
java-common 0.59ubuntu1 Tony Travis (2018-02-12)
kraken 0.10.5~beta-0~ubuntu14.04~ppa1 Andreas Tille (2016-03-17)
kronatools 2.7+dfsg-0~ubuntu14.04~ppa2 Andreas Tille (2016-08-04)
lefse 1.0+20160802-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-04)
libcolt-free-java 1.2.0+dfsg-4ubuntu1 Andreas Tille (2015-07-20)
libhat-trie 0.1.2-1ubuntu1 Tony Travis (2018-02-12)
libhmsbeagle 2.1.2+20150609-1ubuntu1 Andreas Tille (2015-07-20)
libmems 1.6.0+4725-1ubuntu1 Andreas Tille (2015-04-20)
libmuscle 3.7+4565-0ubuntu2 Andreas Tille (2015-04-20)
libzeus-jscl-java 1.72-1ubuntu1 Andreas Tille (2015-04-27)
mapdamage 2.0.6+dfsg-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-04)
mauve-aligner 2.4.0+4734~-1ubuntu1 Andreas Tille (2015-07-18)
metaphlan2 2.5.0-0~ubuntu14.04~ppa1 Andreas Tille (2016-07-28)
microbegps 1.0.0-0ubuntu1 Andreas Tille (2015-05-06)
mrbayes 3.2.5+dfsg-1ubuntu1 Andreas Tille (2015-06-29)
mummer 3.23~dfsg-3ubuntu1 Andreas Tille (2015-04-16)
murasaki 1.68.6-0ubuntu1 Andreas Tille (2015-04-16)
openjdk-8 8u151-b12-1ubuntu1 Tony Travis (2018-02-12)
picard-tools 1.138+dfsg.1-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-01)
placnet 1.03-2~ubuntu14.04.1~ppa1 Andreas Tille (2016-05-26)
plast 2.3.1+dfsg-2~ubuntu14.04~ppa1 Andreas Tille (2016-02-10)
plink1.9 1.90~b5.2-180109-1ubuntu3 Steffen Möller (2018-02-11)
prodigal 1:2.6.1-1~ubuntu14.10.1~ppa1 Michael R. Crusoe (2015-01-27)
progressivemauve 1.2.0+4713-1ubuntu1 Andreas Tille (2015-05-20)
python-matplotlib-venn 0.11-0ubuntu1 Andreas Tille (2015-05-06)
python-pyfaidx 0.4.2-1~ubuntu1 Andreas Tille (2015-10-20)
python-pysam 0.9.1+ds-1~ubuntu14.04~ppa1 Andreas Tille (2016-07-01)
python-pyvcf 0.6.7-1~ubuntu1 Andreas Tille (2015-10-15)
python-subprocess32 3.2.6-1ubuntu1 Andreas Tille (2015-06-26)
r-bioc-savr 1.10.0-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-18)
r-cran-cairo 1.5-9-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-22)
r-cran-gridextra 2.2.1-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-18)
r-cran-matrixmodels 0.4-1-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-18)
r-cran-quantreg 5.26-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-18)
r8s 1.8+ds-0ubuntu1 Andreas Tille (2015-06-23)
rmatrix 1.2-6-1~ubuntu14.04~ppa1 Andreas Tille (2016-08-18)
samtools 1.6-4unbuntu1 Steffen Möller (2018-02-11)
screed 0.7.1-1ubuntu1 Michael R. Crusoe (2014-09-26)
sga 0.10.13-1 Michael R. Crusoe (2014-09-26)
shim 0.1.1-1ubuntu2~maverick Jeff Buchbinder (2011-04-21)
shim-driver-signature-topaz 0.1.1-1ubuntu0.1~maverick Jeff Buchbinder (2011-04-21)
sickle 1.33-1ubuntu1 Andreas Tille (2015-06-29)
smalt 0.7.6-4ubuntu1 Andreas Tille (2015-03-24)
spades 3.11.1+dfsg-1ubuntu2 Tony Travis (2018-02-12)
trimmomatic 0.36+dfsg-3ubuntu2 Tony Travis (2018-02-12)
varscan 2.3.7+dfsg-1ubuntu1 Andreas Tille (2015-03-24)
vsearch 1.9.10-1~ubuntu14.04~ppa1 Andreas Tille (2016-02-09)
167 of 67 results

Latest updates

  • openjdk-8 6 days ago
    Failed to build: amd64 i386
  • java-common 6 days ago
    Successfully built
  • libhat-trie 6 days ago
    Successfully built
  • spades 6 days ago
    Failed to build: amd64 i386
  • trimmomatic 6 days ago
    Successfully built