[sync request] rpy 1.0~rc1-5 from Debian unstable (main)

Bug #93924 reported by ljlolel
28
Affects Status Importance Assigned to Milestone
rpy (Ubuntu)
Fix Released
Medium
Unassigned
software-properties (Ubuntu)
Invalid
Undecided
Unassigned

Bug Description

Binary package hint: python-rpy

Installation on Ubuntu Feisty (I think this problem is in Edgy too) has version of R 2.4.1. When one installs python-rpy, however, it only intalls _rpy2040.so, which is useless for this version of R. The solution is to include _rpy2041.so in the package.

Rpy email thread below.

------------------------------------------------------------------------------------------------------

> No, that doesn't seem to be it. Both folders only have _rpy2040.so, when my
> version of R is clearly 2.4.1. My python2.5 site-packages actually has more
> files related to rpy than 2.4.
>
> In any case, this is a simple problem to remedy. Just include the
> _rpy2041.so with the package. I imagine it will help a lot of people out.

Yes, that is what we do for Debian.

If you file an Ubuntu bug report for rpy, an updated (and corrected)
Ubuntu package may get produced,

Dirk

> j
> -------------------------------------------------------------------------------------------------
> Try using python2.4, not python2.5. Python 2.5 is not yet suppported by the
>
> automated build of Python modules from Python module sources.
>
> At least not on Debian. I am not entirely sure exactly what Ubuntu does to
> the RPy and R packages I maintain for Debina ... as they never communicate
> back. It *may* well be that they try to support Python 2.5 automatically; I
> just don't know if include RPy. On my Debian testing system, the directory
>
> /usr/lib/python2.5/site-packages
>
> is empty whereas
>
> /usr/lib/python2.4/site-packages
>
> contains the on-install autobuilt files, incl rpy's. What does Feisty have?
>
> Dirk
> | The rpy2041 module does not exist. My solution is to google an rpm with
> the
> | file inside, extract it, and place it in the approprate folder on my
> | installation. Everything works after that. I do not, however, think this
> | should be the default behaviour.
> |

Revision history for this message
Dirk Eddelbuettel (edd) wrote :

Updating to Debian package 1.0-rc1-4 (dated Dec 27, 2006) will fix this as RPy then
recognises R 2.4.1.

While at it, update to 1.0-rc1-5 which fixes an annoying bug with x11 updates occassionally crashing rpy.

Dirk (R/Rpy maintainer for Debian)

Changed in rpy:
importance: Undecided → Medium
status: Unconfirmed → Confirmed
Revision history for this message
Dan O'Huiginn (daniel-ohuiginn) wrote : Re: [sync request] rpy package missing files

Confirming that the latest Debian package fixes this bug, and requesting a sync. Thanks for the report - and thanks for your help with this, Dirk.

Please sync python-rpy 1.0-rc1-5 (universe) from Debian unstable (http://packages.debian.org/unstable/python/python-rpy)

There are no Ubuntu changes

Summary of Debian changes:

* src/rpymodule.c: Applied patch (from rpy-list) created by Andrew McNamara that resolves the C stack limit error produced by R in some contexts, such as resizing the x11() window. (Closes: #401670)
* Rebuilt under current R version 2.4.1 (Closes: #404636)
* debian/control: (Built-)Depends: on (r-base-core >= 2.4.1)

Revision history for this message
Daniel T Chen (crimsun) wrote : Re: [sync request] python-rpy 1.0~rc1-5 from Debian unstable (main)

Sync request ACKed.

Revision history for this message
Martin Pitt (pitti) wrote :

Nothing to do wit software-properties, AFAICS.

Changed in software-properties:
status: Unconfirmed → Rejected
Revision history for this message
Martin Pitt (pitti) wrote :

[Updating] rpy (1.0~rc1-2 [Ubuntu] < 1.0~rc1-5 [Debian])
 * Trying to add rpy...
  - <rpy_1.0~rc1.orig.tar.gz: already in distro - downloading from librarian>
  - <rpy_1.0~rc1-5.diff.gz: downloading from http://ftp.debian.org/debian/>
  - <rpy_1.0~rc1-5.dsc: downloading from http://ftp.debian.org/debian/>

Changed in rpy:
status: Confirmed → Fix Released
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