sga

Registered by Michael R. Crusoe

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Project information

Maintainer:
Debian Med
Driver:
Not yet selected
Licence:
GNU GPL v3, MIT / X / Expat Licence

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trunk series is the current focus of development.

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Version control system:
Bazaar

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