ivar 1.4.2+dfsg-2ubuntu1 source package in Ubuntu
Changelog
ivar (1.4.2+dfsg-2ubuntu1) mantic; urgency=medium
* d/rules: disable LTO to fix failure to build from source on amd64 and
arm64 on Ubuntu. (LP: #2037769)
-- Mateus Rodrigues de Morais <email address hidden> Wed, 27 Sep 2023 12:41:50 -0300
Upload details
- Uploaded by:
- Mateus Rodrigues de Morais
- Sponsored by:
- Graham Inggs
- Uploaded to:
- Mantic
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ivar_1.4.2+dfsg.orig.tar.xz | 657.0 KiB | 87fbc667080e95823734eeca0dfcec058ff18f1aca7aff89de7a82217a7d2968 |
| ivar_1.4.2+dfsg-2ubuntu1.debian.tar.xz | 45.2 KiB | 3fec41e1a67e7670c7cff180ff5e565a59f1240c9603a6642b2a3c3e1f2f7c12 |
| ivar_1.4.2+dfsg-2ubuntu1.dsc | 2.1 KiB | 3f600100581adcb241284ab9a2492e46c933510845a9c84b76b17e35282f59c0 |
Available diffs
Binary packages built by this source
- ivar: functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
- ivar-dbgsym: debug symbols for ivar
- ivar-doc: functions broadly useful for viral amplicon-based sequencing (documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
.
This package contains the html documentation for ivar.
