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libtfbs-perl package

libtfbs-perl 0.5.svn.20091128-1build1 source package in Ubuntu

Changelog

libtfbs-perl (0.5.svn.20091128-1build1) oneiric; urgency=low

  * Rebuild for Perl 5.12.
 -- Colin Watson <email address hidden>   Tue, 10 May 2011 22:53:28 +0100

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Uploaded by:
Colin Watson
Uploaded to:
Oneiric
Original maintainer:
Debian Med
Architectures:
any
Section:
perl
Urgency:
Low Urgency

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File Size SHA-256 Checksum
libtfbs-perl_0.5.svn.20091128.orig.tar.gz 140.9 KiB f26a8ba5eca93a0fb4eb4b59b36faaa033dc307dacb798862566f90dd711646b
libtfbs-perl_0.5.svn.20091128-1build1.diff.gz 3.9 KiB bbc97459b6e6a2d4370d03ecdb47f736e45979a85b9eca0405eddb71c20455b0
libtfbs-perl_0.5.svn.20091128-1build1.dsc 2.1 KiB 60e68f82621c9cc5688348050a455fb041b9cce02fbf7918e4a6666f4b31b79a

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Binary packages built by this source

libtfbs-perl: scanning DNA sequence with a position weight matrix

 The TFBS perl modules comprise a set of routines to interact with the
 Transfac and Jaspar databases that describe a special family of proteins,
 the transcription factors. These bind to genomic DNA to initiate (or
 prevent) the readout of a gene. Once multiple binding sites are known
 for a transcription factor, these are gathered in a single file and are
 aligned in order to find position-specific characteristica that might
 be used to predict such binding events in novel DNA sequences.
 .
 If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
 TFBS: Computational framework for transcription factor binding site analysis.
 Bioinformatics 18:1135-1136".