Ubuntu
macs package

Change log for macs package in Ubuntu

1 → 31 of 31 results First • Previous • Next • Last
Published in oracular-release
Published in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
macs (3.0.1-2build1) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 17:58:39 +1100
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
macs (3.0.1-2) unstable; urgency=medium

  * d/rules: make use of dh_numpy3 to add the numpy ABI dependency.
  * d/patches/spelling: fix typos.
  * d/lintian-overrides: update to match change in warnings.

 -- Michael R. Crusoe <email address hidden>  Wed, 28 Feb 2024 12:39:52 +0100

Available diffs

Deleted in noble-updates (Reason: superseded by release)
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
macs (3.0.1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version. Closes: #1056813
  * New Build-Depends: python3-cykhash, python3-hmmlearn
  * Fix location of simde header
  * No runtime dependency from cython
    Closes: #1057991

  [ Michael R. Crusoe ]
  * New upstream version
  * Refreshed patches.
  * d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
  * d/clean: remove temp/ directory leftover from test execution.
    Closes: #1047612
  * d/rules: s/MACS2/MACS3/g for new major version.
  * d/patches/simde: doesn't need forwarding
  * d/control: build dep on newer packaging version of cykhash to pick
    up Python 3.12 support.
  * d/control: build dep on newer packaging version of hmmlearn to pick
    up Python 3.12 support.
  * d/rules: choose a better path to the launch script for testing

  TODO: cmdline test failures:
   16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
   16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
   16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
   16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
  * d/patch/no_install_depends_cython.patch removed, applied upstream.
  * add patch to force the use of Python3.
  * d/control: add build-dep on bc for the tests.
  * d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
    author to match the prelease version of hmmlearn in the archive.
  * d/patches/invalid_escape_sequence: fix a SyntaxWarning.

 -- Michael R. Crusoe <email address hidden>  Sat, 24 Feb 2024 12:56:15 +0100
Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
macs (2.2.9.1-1build2) noble; urgency=medium

  * No-change rebuild against dh-python 6.20231223 to
    drop dependency on cython3-legacy

 -- Graham Inggs <email address hidden>  Mon, 25 Dec 2023 20:31:57 +0000

Available diffs

Superseded in noble-release
Deleted in noble-proposed (Reason: Moved to noble) 
macs (2.2.9.1-1build1) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <email address hidden>  Thu, 02 Nov 2023 09:22:39 +0100
Superseded in noble-release
Published in mantic-release
Deleted in mantic-proposed (Reason: Moved to mantic) 
macs (2.2.9.1-1) unstable; urgency=medium

  * New upstream release. Closes: #1042180, #1041203
  * d/patches: drop enable_python3.10.patch & no-pip.patch; they are no
    longer needed
  * d/patches: forward patches upstream as appropriate.
  * no longer call dh_auto_clean to avoid call to "setup.py clean" which
    always runs cython.
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Michael R. Crusoe <email address hidden>  Wed, 09 Aug 2023 12:18:49 +0200

Available diffs

Superseded in mantic-release
Published in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
macs (2.2.7.1-6) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1

 -- Andreas Tille <email address hidden>  Thu, 24 Nov 2022 12:18:59 +0100
Superseded in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
macs (2.2.7.1-5ubuntu2) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as supported

 -- Graham Inggs <email address hidden>  Thu, 03 Nov 2022 15:57:08 +0000
Superseded in lunar-release
Obsolete in kinetic-release
Published in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
macs (2.2.7.1-5ubuntu1) jammy; urgency=medium

  * Rewrite a test case to avoid a long-standing floating point
    rounding error, that now also affects ppc64el

 -- Graham Inggs <email address hidden>  Thu, 14 Apr 2022 11:41:56 +0000
Superseded in jammy-proposed 
macs (2.2.7.1-4ubuntu2) jammy; urgency=medium

  * No-change rebuild with Python 3.10 only

 -- Graham Inggs <email address hidden>  Wed, 16 Mar 2022 22:46:09 +0000
Superseded in jammy-proposed 
macs (2.2.7.1-5) unstable; urgency=medium

  * Enable Builds with python3.10
    Closes: #998440

 -- Andreas Tille <email address hidden>  Mon, 08 Nov 2021 14:29:12 +0100
Superseded in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
macs (2.2.7.1-4ubuntu1) jammy; urgency=medium

  * Avoid FTBFS when Python has a two-digit minor version

 -- Graham Inggs <email address hidden>  Thu, 04 Nov 2021 07:26:36 +0000
Superseded in jammy-proposed 
macs (2.2.7.1-3build3) jammy; urgency=medium

  * No-change rebuild to add python3.10.

 -- Matthias Klose <email address hidden>  Mon, 18 Oct 2021 00:19:43 +0200

Available diffs

Superseded in jammy-proposed 
macs (2.2.7.1-4) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * watch file standard 4 (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 01 Oct 2021 16:24:57 +0200
Superseded in jammy-release
Obsolete in impish-release
Obsolete in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
macs (2.2.7.1-3build2) hirsute; urgency=medium

  * No-change rebuild to drop python3.8 extensions.

 -- Matthias Klose <email address hidden>  Mon, 07 Dec 2020 18:23:27 +0100

Available diffs

Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
macs (2.2.7.1-3build1) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as supported.

 -- Matthias Klose <email address hidden>  Mon, 26 Oct 2020 14:01:50 +0100
Superseded in hirsute-release
Obsolete in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
macs (2.2.7.1-3) unstable; urgency=medium

  * Link properly with libm
    Closes: #965073
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <email address hidden>  Wed, 15 Jul 2020 23:27:39 +0200

Available diffs

Superseded in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
macs (2.2.7.1-2) unstable; urgency=medium

  * Ensure that debian/rules clean always suceeds. Closes #958109

 -- Michael R. Crusoe <email address hidden>  Mon, 27 Apr 2020 19:31:48 +0200

Available diffs

Superseded in groovy-proposed 
macs (2.2.7.1-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debian/patches/fix_test_signal_failures: removed, applied upstream
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Add cython3 build-dep and force a fresh cythonizing
  * debian/patches/keep_debug: remove the -g0 from setup.py
  * fix manpages by adjusting the PYTHONPATH

 -- Michael R. Crusoe <email address hidden>  Mon, 13 Apr 2020 10:29:34 +0200
Deleted in focal-proposed (Reason: Debian #949204, scheduled for removal, no rdeps) 
macs (2.2.6-3) unstable; urgency=medium

  * Skip command line tests on arm64 ppc64el s390x.

 -- Michael R. Crusoe <email address hidden>  Sat, 28 Dec 2019 12:57:18 +0100

Available diffs

Superseded in focal-proposed 
macs (2.2.6-2) unstable; urgency=medium

  * Run even more tests.
  * Patch from upstream to fix test that fails with Python 3.8.1rc1+

 -- Michael R. Crusoe <email address hidden>  Fri, 20 Dec 2019 13:24:14 -0800

Available diffs

Superseded in focal-proposed 
macs (2.2.6-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Drop cython from Build-Depends

  [ Michael R. Crusoe ]
  * New upstream version
  * Set upstream metadata fields: Repository.
  * Remove obsolete fields Name from debian/upstream/metadata.
  * Get sources from GitHub, so we have the tests
  * New upstream version

 -- Michael R. Crusoe <email address hidden>  Tue, 17 Dec 2019 15:35:50 +0100

Available diffs

Deleted in focal-release (Reason: Debian #949204, scheduled for removal, no rdeps)
Deleted in focal-proposed (Reason: moved to Release) 
macs (2.2.4-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.4.1
  * Build with Python3
    Closes: #936976

 -- Andreas Tille <email address hidden>  Thu, 03 Oct 2019 21:18:16 +0200

Available diffs

Superseded in focal-release
Obsolete in eoan-release
Obsolete in disco-release
Deleted in disco-proposed (Reason: moved to release) 
macs (2.1.2.1-1) unstable; urgency=medium

  [ Jelmer Vernooij ]
  * Use secure URI in Homepage field.

  [ Michael R. Crusoe ]
  * New upstream release
  * Drop spelling patch (incorporated upstream)

 -- Michael R. Crusoe <email address hidden>  Mon, 22 Oct 2018 08:51:13 -0700

Available diffs

Superseded in disco-release
Obsolete in cosmic-release
Published in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
macs (2.1.1.20160309-2) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * debian/upstream/metadata:
     - UTF-8 notation of names rather than TeX syntax
     - added eprint
  * d/rules: Do not parse d/changelog
  * Remove Tim Booth and H. Soon Gweon from Uploaders
  * Standards-Version: 4.1.3
  * hardening=+all
  * debhelper 11

  [ Katerina Kalou ]
  * Add autopkgtest (Closes: #879622)

 -- Katerina Kalou <email address hidden>  Mon, 19 Feb 2018 20:00:45 +0200
Superseded in bionic-release
Obsolete in artful-release
Deleted in artful-proposed (Reason: moved to release) 
macs (2.1.1.20160309-1build1) artful; urgency=medium

  * No-change rebuild to drop _PyFPE support.

 -- Matthias Klose <email address hidden>  Tue, 05 Sep 2017 08:21:48 +0000
Superseded in artful-release
Obsolete in zesty-release
Obsolete in yakkety-release
Deleted in yakkety-proposed (Reason: moved to release) 
macs (2.1.1.20160309-1) unstable; urgency=medium

  * New upstream release.
  * Bump Standards-Version to 3.9.8
  * Refresh & re-submit spelling patch
  * enable "bindnow" linker flag hardening

 -- Michael R. Crusoe <email address hidden>  Fri, 13 May 2016 10:49:54 -0700
Superseded in yakkety-release
Deleted in yakkety-proposed (Reason: moved to release) 
macs (2.1.1.20160226-1) unstable; urgency=medium

  * New upstream release

 -- Michael R. Crusoe <email address hidden>  Sat, 05 Mar 2016 09:53:12 -0800
Superseded in yakkety-release
Published in xenial-release
Deleted in xenial-proposed (Reason: moved to release) 
macs (2.1.0.20151222-1) unstable; urgency=medium

  * New upstream release
  * A couple more spelling fixes & updated VCS URLs.

 -- Michael R. Crusoe <email address hidden>  Mon, 01 Feb 2016 09:49:01 -0800
Superseded in xenial-release
Deleted in xenial-proposed (Reason: moved to release) 
macs (2.1.0.20150731-1) unstable; urgency=low

  * debian/watch: now released via PyPI.
  * debian/rules:
     - 2.1.0 uses a single binary with subcommands, manpages have been updated
     - use pybuild
  * debian/control:
     - `cme fix dpkg-control` reformating
     - added myself to uploaders
     - upgrades to standards-version 3.9.6,dropped deprecated DM-Upload-Allowed
     - now managed via git; VCS URLs updated
  * debian/upstream/metadata: added paper
  * debian/upstream/signing-key.asc: upstream now signs their releases
  * debian/copyright:
     - upstream is now BSD-3-clause
     - MACS2/khash.h is Expat licensed
  * debian/lintian-overrides: silence warning about line breaks
  * debian/manpages: install manual pages using dh_installman
  * debian/patches/{series,spelling}: fix two spelling errors from upstream
  * debian/docs: README is now README.rst

 -- Michael R. Crusoe <email address hidden>  Sat, 03 Oct 2015 10:37:31 -0700

Available diffs

Superseded in xenial-release
Obsolete in wily-release
Obsolete in vivid-release
Obsolete in utopic-release
Published in trusty-release
Obsolete in saucy-release
Deleted in saucy-proposed (Reason: moved to release) 
macs (2.0.9.1-1) unstable; urgency=low


  * Initial upload to Debian (Closes: #696331)
  * debian/control:
    - Adaptations to Debian Med team maintenance
    - X-Python-Version: >=2.7 because build fails
      for Python 2.6
    - Standards-Version: 3.9.4 (no changes needed)
    - Priority: optional
  * debian/watch: Removed useless comments
  * debian/README.*: Removed unused dh-make templates
  * debian/copyright: Added some missing information
  * debian/rules:
    - Removed useless dh-make comment
    - use dh_python2
    - use help2man to create manpages
  * debhelper 9 (control+compat)

 -- Andreas Tille <email address hidden>  Wed, 19 Dec 2012 19:32:44 +0100
1 → 31 of 31 results First • Previous • Next • Last