mosdepth 0.3.3+ds-2 source package in Ubuntu
Changelog
mosdepth (0.3.3+ds-2) unstable; urgency=medium * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille <email address hidden> Thu, 24 Nov 2022 12:43:43 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| mosdepth_0.3.3+ds-2.dsc | 2.2 KiB | 175bac21c8fa47c990178f8a24774e9f0085b0b06c944c2446d817458a390473 |
| mosdepth_0.3.3+ds.orig.tar.xz | 24.0 KiB | 4f87e6d7c992fc64bd63a2c255d7d9900d3adf47dee219c65141592c7b156bd3 |
| mosdepth_0.3.3+ds-2.debian.tar.xz | 699.6 KiB | 085a37d790364767b1ef1d5d3b62b7eeb4b05fc8dee8fecfd7095b230f1bf25c |
No changes file available.
Binary packages built by this source
- mosdepth: BAM/CRAM depth calculation biological sequencing
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
- mosdepth-dbgsym: debug symbols for mosdepth
- mosdepth-examples: Test data for mosdepth
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.
