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rna-star package

rna-star 2.7.11b+dfsg-1build1 source package in Ubuntu

Changelog

rna-star (2.7.11b+dfsg-1build1) noble; urgency=medium

  * No-change rebuild against libhts3t64.

 -- Colin Watson <email address hidden>  Mon, 15 Apr 2024 00:10:25 +0100

Upload details

Uploaded by:
Colin Watson
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
amd64 arm64 loong64 ppc64el mips64el
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
rna-star_2.7.11b+dfsg.orig.tar.xz 508.8 KiB b06b9c0074fd7ab018edf7549582ee4ae29ed807aa8238811d888bf9ff73eaab
rna-star_2.7.11b+dfsg-1build1.debian.tar.xz 370.4 KiB 8e7487669f3a8d24e073e36c34d50ffc086fcedadf46d0e1c0cf6c14e2b9b340
rna-star_2.7.11b+dfsg-1build1.dsc 2.1 KiB abeb13023e678f283a559b23fe799d8236670f0184a9957a522c503bc900bfb0

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Binary packages built by this source

rna-star: ultrafast universal RNA-seq aligner

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

rna-star-dbgsym: debug symbols for rna-star