r-bioc-tfbstools 1.26.0+dfsg-1build1 (s390x binary) in ubuntu groovy
TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
and Information Content Matrix (ICM). It can also scan putative TFBS
from sequence/alignment, query JASPAR database and provides a wrapper of
de novo motif discovery software.
Details
- Package version:
- 1.26.0+dfsg-1build1
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
s390x build of r-bioc-tfbstools 1.26.0+dfsg-1build1 in ubuntu groovy PROPOSED produced
these files:
Package relationships
- Depends on:
- libc6 (>= 2.4)
- r-api-4.0
- r-api-bioc-3.11
- r-base-core (>= 4.0.0.20200528-1)
- r-bioc-biobase (>= 2.28)
- r-bioc-biocgenerics (>= 0.14.0)
- r-bioc-biocparallel (>= 1.2.21)
- r-bioc-biostrings (>= 2.36.4)
- r-bioc-bsgenome (>= 1.36.3)
- r-bioc-cner (>= 1.4.0)
- r-bioc-dirichletmultinomial (>= 1.10.0)
- r-bioc-genomeinfodb (>= 1.6.1)
- r-bioc-genomicranges (>= 1.20.6)
- r-bioc-iranges (>= 2.2.7)
- r-bioc-rtracklayer (>= 1.28.10)
- r-bioc-s4vectors (>= 0.9.25)
- r-bioc-seqlogo (>= 1.34.0)
- r-bioc-xvector (>= 0.8.0)
- r-cran-catools (>= 1.17.1)
- r-cran-dbi (>= 0.6)
- r-cran-gtools (>= 3.5.0)
- r-cran-rsqlite (>= 1.0.0)
- r-cran-tfmpvalue (>= 0.0.5)
- r-cran-xml (>= 3.98-1.3)
- Suggests:
- Recommends: