med-bio 3.8 (amd64 binary) in ubuntu lunar
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
Details
- Package version:
- 3.8
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of debian-med 3.8 in ubuntu lunar PROPOSED produced
these files:
- med-bio_3.8_all.deb (8.5 KiB)
Package relationships
- Depends on:
- Suggests:
- acacia
- adun.app
- agat
- amos-assembler
- amoscmp
- anfo
- annovar
- apollo
- arachne
- arb
- arvados
- asap
- axparafit
- axpcoords
- bagpipe
- bambus
- bax2bam
- bcbio
- biceps
- big-blast
- bigsdb
- bismark
- blat
- blimps-utils
- blobology
- braker
- btk-core
- cactus
- caftools
- card-rgi
- catfishq
- cdna-db
- cellprofiler
- cinema
- cluster3
- cmap
- conda-package-handling
- condetri
- contrafold
- contralign
- coot
- copycat
- covpipe
- crossbow
- crux-toolkit
- cufflinks
- cytoscape
- dascrubber
- dazzle
- deepbinner
- dendroscope
- diann
- dnapi
- e-hive
- ecell
- embassy-phylip
- emboss-explorer
- ensembl
- ensembl-vep
- epigrass
- estferret
- euler-sr
- euler2
- exabayes
- exalt
- excavator
- ffp
- fieldbioinformatics
- figaro
- flappie
- flexbar
- forester
- forge
- galaxy
- gatk
- gbrowse-syn
- genemark
- genesplicer
- genetrack
- genezilla
- genographer
- gerp++
- getdata
- glimmerhmm
- gmv
- gramalign
- graphbin
- graphmap2
- haploview
- hawkeye
- htqc
- hts-nim-tools
- idefix
- idseq-bench
- illustrate
- inspect
- jbrowse
- jigsaw
- kempbasu
- libhdf5-dev
- libhnswlib-dev
- lofreq
- mach-haplotyper
- mage2tab
- maker2
- manta
- marginphase
- martj
- maude
- maxd
- medaka
- meme
- mesquite
- metabit
- metaeuk
- metarep
- metastudent-data
- metastudent-data-2
- migrate
- minexpert2
- minimus
- mirbase
- modeller
- molekel
- mosaik-aligner
- mpsqed
- mrs
- msatfinder
- mugsy
- mummergpu
- mview
- nano-snakemake
- nanocall
- nanocomp
- nanoplot
- ncbi-magicblast
- nextsv
- ngila
- ngsqctoolkit
- nw-align
- oases
- obo-edit
- oligoarrayaux
- omegamap
- oncofuse
- operondb
- optitype
- paipline
- pangolin
- partigene
- partitionfinder
- patristic
- pcma
- pfaat
- phagefinder
- phpphylotree
- phylographer
- phylophlan
- phyloviz-core
- phylowin
- pigx-scrnaseq
- pipasic
- plato
- pomoxis
- pplacer
- profit
- profphd
- prot4est
- psipred
- pssh2
- pufferfish
- purple
- pyrophosphate-tools
- python3-alignlib
- python3-anndata
- python3-cgecore
- python3-cyvcf2
- python3-deeptools
- python3-deeptoolsintervals
- python3-htseq
- python3-intake
- python3-loompy
- python3-nanoget
- python3-nanomath
- python3-ncls
- python3-orange
- python3-py2bit
- python3-pybel
- python3-pychopper
- python3-pyfaidx
- python3-pyflow
- python3-pyranges
- python3-pyrle
- python3-pysam
- python3-tinyalign
- q2-alignment
- q2-composition
- q2-cutadapt
- q2-dada2
- q2-deblur
- q2-demux
- q2-diversity
- q2-emperor
- q2-feature-classifier
- q2-feature-table
- q2-fragment-insertion
- q2-gneiss
- q2-longitudinal
- q2-metadata
- q2-phylogeny
- q2-quality-control
- q2-quality-filter
- q2-sample-classifier
- q2-taxa
- q2-types
- q2-vsearch
- q2cli
- q2templates
- qtlcart
- qtlreaper
- qualimap
- quast
- r-bioc-annotationhub
- r-bioc-aroma.light
- r-bioc-beachmat
- r-bioc-biocneighbors
- r-bioc-biocsingular
- r-bioc-bitseq
- r-bioc-ctc
- r-bioc-dnacopy
- r-bioc-ensembldb
- r-bioc-experimenthub
- r-bioc-geneplotter
- r-bioc-genomicalignments
- r-bioc-genomicfiles
- r-bioc-genomicranges
- r-bioc-go.db
- r-bioc-grohmm
- r-bioc-gviz
- r-bioc-isoformswitchanalyzer
- r-bioc-mofa2
- r-bioc-org.hs.eg.db
- r-bioc-org.mm.eg.db
- r-bioc-qusage
- r-bioc-savr
- r-bioc-singlecellexperiment
- r-bioc-structuralvariantannotation
- r-bioc-tximport
- r-cran-amap
- r-cran-biwt
- r-cran-boolnet
- r-cran-corrplot
- r-cran-drinsight
- r-cran-dynamictreecut
- r-cran-epir
- r-cran-fitdistrplus
- r-cran-forecast
- r-cran-gprofiler2
- r-cran-minerva
- r-cran-optimalcutpoints
- r-cran-parmigene
- r-cran-pheatmap
- r-cran-qqman
- r-cran-rcpphnsw
- r-cran-rentrez
- r-cran-sctransform
- r-other-apmswapp
- r-other-fastbaps
- raccoon
- raxml-ng
- rbs-finder
- relion-cuda
- relion-gui-cuda
- repeatmasker
- resfinder-db
- roadtrips
- roche454ace2caf
- rosa
- rose
- rsat
- sailfish
- sap
- science-workflow
- sepp
- seq-gen
- seq-seq-pan
- seqcluster
- seqwish
- sift
- signalalign
- sina
- sistr
- situs
- solvate
- sourmash
- sparta
- splitstree
- ssaha
- strap
- strap-base
- strelka
- tab2mage
- tacg
- tandem-genotypes
- taverna
- taxinspector
- tetra
- tide
- tigr-glimmer-mg
- tipp
- tn-seqexplorer
- tophat
- treebuilder3d
- trinityrnaseq
- tripal
- trnascan-se
- twain
- ufasta
- ugene
- umap
- unc-fish
- uniprime
- varmatch
- varscan
- vdjtools
- vg
- vienna-rna
- viewmol
- vmd
- x-tandem-pipeline
- zodiac-zeden
- Recommends:
- abacas
- abpoa
- abyss
- acedb-other
- adapterremoval
- adun-core
- aegean
- aevol
- alien-hunter
- alter-sequence-alignment
- altree
- amap-align
- ampliconnoise
- andi
- any2fasta
- aragorn
- arden
- ariba
- art-nextgen-simulation-tools
- artemis
- artfastqgenerator
- assembly-stats
- assemblytics
- atac
- ataqv
- atropos
- augur
- augustus
- autodock
- autodock-vina
- autogrid
- avogadro
- axe-demultiplexer
- baitfisher
- bali-phy
- ballview
- bamclipper
- bamkit
- bamtools
- bandage
- barrnap
- bbmap
- bcalm
- bcftools
- beads
- beagle
- beast-mcmc
- beast2-mcmc
- bedops
- bedtools
- belvu
- berkeley-express
- bio-eagle
- bio-rainbow
- bio-tradis
- bio-vcf
- bioawk
- biobambam2
- biosyntax
- bitseq
- blasr
- blixem
- bolt-lmm
- bowtie
- bowtie2
- boxshade
- bppphyview
- bppsuite
- brig
- btllib-tools
- busco
- bustools
- bwa
- canu
- cassiopee
- cat-bat
- cct
- cd-hit
- cdbfasta
- centrifuge
- cgview
- changeo
- chimeraslayer
- chromhmm
- chromimpute
- cif-tools
- circlator
- circos
- clearcut
- clonalframe
- clonalframeml
- clonalorigin
- clustalo
- clustalw
- clustalx
- cnvkit
- codonw
- comet-ms
- concavity
- conservation-code
- covtobed
- crac
- csb
- cutadapt
- cutesv
- daligner
- damapper
- datamash
- dawg
- dazzdb
- deepnano
- delly
- density-fitness
- dextractor
- dialign
- dialign-tx
- diamond-aligner
- discosnp
- disulfinder
- dnaclust
- dnarrange
- dotter
- drop-seq-tools
- dssp
- dwgsim
- e-mem
- ea-utils
- ecopcr
- edtsurf
- eigensoft
- elph
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- emmax
- estscan
- examl
- exonerate
- fasta3
- fastahack
- fastani
- fastaq
- fastdnaml
- fastlink
- fastml
- fastp
- fastq-pair
- fastqc
- fastqtl
- fasttree
- ffindex
- figtree
- filtlong
- fitgcp
- flash
- flye
- fml-asm
- freebayes
- freecontact
- fsa
- fsm-lite
- gamgi
- garli
- garlic
- gasic
- gatb-core
- gbrowse
- gdpc
- gemma
- genometester
- genomethreader
- genometools
- genomicsdb-tools
- gentle
- gff2aplot
- gff2ps
- gffread
- ggd-utils
- ghemical
- ghmm
- glam2
- gmap
- grabix
- graphlan
- grinder
- gromacs
- gsort
- gubbins
- gwama
- harvest-tools
- hhsuite
- hilive
- hinge
- hisat2
- hmmer
- hmmer2
- hyphy-mpi
- idba
- igblast
- igdiscover
- igor
- igv
- indelible
- infernal
- insilicoseq
- ipig
- iqtree
- iva
- jaligner
- jalview
- jellyfish
- jellyfish1
- jmodeltest
- jmol
- kalign
- kallisto
- kaptive
- khmer
- kineticstools
- king-probe
- kissplice
- kleborate
- kma
- kmc
- kmer
- kmerresistance
- kraken
- kraken2
- lagan
- lamarc
- lamassemble
- lambda-align
- lambda-align2
- last-align
- lastz
- leaff
- lefse
- libpwiz-tools
- librg-utils-perl
- libvcflib-tools
- lighter
- logol
- loki
- ltrsift
- lucy
- lumpy-sv
- macs
- macsyfinder
- maffilter
- mafft
- malt
- mapdamage
- mapsembler2
- maq
- maqview
- mash
- massxpert
- mauve-aligner
- mcaller
- mecat2
- megadepth
- megahit
- megan-ce
- melting
- meryl
- metabat
- metaphlan
- metastudent
- mhap
- microbegps
- microbiomeutil
- mindthegap
- minia
- miniasm
- minimac4
- minimap
- minimap2
- mipe
- mira-assembler
- mirtop
- mlv-smile
- mmb
- mmseqs2
- mosdepth
- mothur
- mptp
- mrbayes
- multiqc
- mummer
- murasaki
- muscle
- muscle3
- mustang
- nanofilt
- nanolyse
- nanook
- nanopolish
- nanostat
- nanosv
- nast-ier
- ncbi-acc-download
- ncbi-blast+
- ncbi-blast+-legacy
- ncbi-entrez-direct
- ncbi-epcr
- ncbi-seg
- ncbi-tools-bin
- ncbi-tools-x11
- ncl-tools
- ncoils
- neobio
- ngmlr
- njplot
- norsnet
- norsp
- ntcard
- nxtrim
- obitools
- openms
- optimir
- pal2nal
- paleomix
- paml
- paraclu
- parasail
- parsinsert
- parsnp
- patman
- pbdagcon
- pbhoney
- pbjelly
- pbsim
- pbsuite
- pdb2pqr
- perlprimer
- perm
- pftools
- phast
- phipack
- phybin
- phylip
- phylonium
- phyml
- physamp
- phyutility
- phyx
- picard-tools
- picopore
- pigx-rnaseq
- piler
- pilercr
- pilon
- pinfish
- pique
- pirs
- pizzly
- placnet
- plasmidid
- plasmidomics
- plasmidseeker
- plast
- plink
- plink1.9
- plink2
- plip
- poa
- populations
- porechop
- poretools
- prank
- predictnls
- presto
- prime-phylo
- primer3
- prinseq-lite
- proalign
- probabel
- probalign
- probcons
- proda
- prodigal
- profbval
- profisis
- profnet-bval
- profnet-chop
- profnet-con
- profnet-isis
- profnet-md
- profnet-norsnet
- profnet-prof
- profnet-snapfun
- profphd-net
- profphd-utils
- proftmb
- progressivemauve
- prokka
- proteinortho
- prottest
- provean
- pscan-chip
- pscan-tfbs
- psortb
- pullseq
- pycoqc
- pycorrfit
- pyensembl
- pyfastx
- pymol
- pyscanfcs
- python3-biomaj3-daemon
- python3-cogent3
- python3-emperor
- python3-geneimpacts
- python3-gffutils
- python3-pairtools
- python3-pybedtools
- python3-sqt
- python3-treetime
- pyvcf
- qcat
- qcumber
- qiime
- qtltools
- quicktree
- quorum
- qutemol
- r-bioc-annotate
- r-bioc-biostrings
- r-bioc-cner
- r-bioc-cummerbund
- r-bioc-deseq2
- r-bioc-ebseq
- r-bioc-edger
- r-bioc-genefilter
- r-bioc-geoquery
- r-bioc-hilbertvis
- r-bioc-htsfilter
- r-bioc-impute
- r-bioc-limma
- r-bioc-megadepth
- r-bioc-mergeomics
- r-bioc-metagenomeseq
- r-bioc-mofa
- r-bioc-multiassayexperiment
- r-bioc-mutationalpatterns
- r-bioc-pcamethods
- r-bioc-phyloseq
- r-bioc-rtracklayer
- r-bioc-scater
- r-bioc-tfbstools
- r-cran-adegenet
- r-cran-adephylo
- r-cran-alakazam
- r-cran-ape
- r-cran-bio3d
- r-cran-distory
- r-cran-genabel
- r-cran-kaos
- r-cran-metamix
- r-cran-phangorn
- r-cran-phytools
- r-cran-pscbs
- r-cran-qtl
- r-cran-rotl
- r-cran-samr
- r-cran-sdmtools
- r-cran-seqinr
- r-cran-seurat
- r-cran-shazam
- r-cran-spp
- r-cran-tcr
- r-cran-tigger
- r-cran-treescape
- r-cran-tsne
- r-cran-vegan
- r-cran-webgestaltr
- r-cran-wgcna
- r-other-ascat
- r-other-mott-happy.hbrem
- r-other-rajewsky-dropbead
- racon
- radiant
- ragout
- rambo-k
- rampler
- rapmap
- rasmol
- raster3d
- rate4site
- raxml
- ray
- rdp-alignment
- rdp-classifier
- rdp-readseq
- readseq
- readucks
- reapr
- recan
- relion
- relion-gui
- repeatmasker-recon
- reprof
- resfinder
- rna-star
- rnahybrid
- roary
- rockhopper
- roguenarok
- rsem
- rtax
- runcircos-gui
- saint
- salmid
- salmon
- sambamba
- samblaster
- samclip
- samtools
- savvy-util
- scoary
- scrappie
- scrm
- scythe
- seaview
- seer
- segemehl
- seqan-apps
- seqan-needle
- seqan-raptor
- seqkit
- seqmagick
- seqprep
- seqsero
- seqtk
- sga
- shasta
- shovill
- sibelia
- sibsim4
- sickle
- sigma-align
- sim4
- sim4db
- simka
- simkamin
- ska
- skesa
- skewer
- smalt
- smithwaterman
- smrtanalysis
- snap
- snap-aligner
- sniffles
- snippy
- snp-sites
- snpeff
- snpomatic
- snpsift
- soapaligner
- soapdenovo
- soapdenovo2
- soapsnp
- sortmerna
- spaced
- spades
- spaln
- spoa
- sprai
- spread-phy
- squizz
- sra-toolkit
- srst2
- ssake
- sspace
- ssw-align
- stacks
- staden
- staden-io-lib-utils
- stringtie
- subread
- suitename
- sumaclust
- sumatra
- sumtrees
- surankco
- surpyvor
- survivor
- svim
- swarm
- sweed
- t-coffee
- tabix
- tantan
- terraphast
- theseus
- thesias
- tiddit
- tigr-glimmer
- tm-align
- tnseq-transit
- toil
- tombo
- tophat-recondition
- topp
- toppred
- tortoize
- trace2dbest
- tracetuner
- transdecoder
- transrate-tools
- transtermhp
- tree-puzzle
- treeview
- treeviewx
- trf
- trim-galore
- trimmomatic
- tvc
- twopaco
- uc-echo
- umap-learn
- umis
- uncalled
- unicycler
- unikmer
- varna
- vcfanno
- vcftools
- velvet
- velvetoptimiser
- virulencefinder
- vmatch
- vsearch
- vt
- wham-align
- wigeon
- wise
- xpore
- yaha
- yanagiba
- yanosim
