Ubuntu
ugene package

ugene crashes on start with symbol lookup error

Bug #566146 reported by Iakov Davydov
28
This bug affects 4 people
Affects Status Importance Assigned to Milestone
ugene (Ubuntu)
Fix Released
Undecided
Unassigned
Lucid
Fix Released
High
Unassigned

Bug Description

Binary package hint: ugene

When I start ugene I get:

/usr/lib/ugene/ugene: symbol lookup error: /usr/lib/ugene/libcore.so.1: undefined symbol: _ZN9QHashData13detach_helperEPFvPNS_4NodeEPvEPFvS1_Ei

ProblemType: Bug
DistroRelease: Ubuntu 10.04
Package: ugene 1.5.2+repack-0ubuntu1
ProcVersionSignature: Ubuntu 2.6.32-14.20-generic
Uname: Linux 2.6.32-14-generic x86_64
NonfreeKernelModules: nvidia
Architecture: amd64
Date: Sun Apr 18 22:52:56 2010
InstallationMedia: Ubuntu 10.04 "Lucid Lynx" - Alpha amd64 (20100224.1)
ProcEnviron:
 PATH=(custom, user)
 LANG=ru_RU.utf8
 SHELL=/bin/bash
SourcePackage: ugene

Update (information for SRU):

This bug makes the whole package totally unusable, since the program can't even start.
TEST CASE: simply start the ugene executable. It will fail with symbol lookup error.

No patch is required since this is a build process issue. Simple rebuild of the package with the current Qt version will fix the bug.
The bug is caused by building the package with Qt 4.6.0beta1 and using it with stable Qt 4.6.2

See original description
Revision history for this message
Iakov Davydov (iakov-davydov) wrote :
Revision history for this message
Ivan Efremov (iefremov) wrote :

Thanks for report, we will try to reproduce the problem.

Changed in ugene (Ubuntu):
assignee: nobody → Ivan Efremov (iefremov)
Revision history for this message
simone (simone-polvani) wrote :

I'm affected by the same error too. In ubuntu 9.10 ugene worked fine. However, after the distro ugrade to lucid I may not start ugene and got the /usr/lib/ugene/ugene: symbol lookup error: /usr/lib/ugene/libcore.so.1: undefined symbol: _ZN9QHashData13detach_helperEPFvPNS_4NodeEPvEPFvS1_Ei

Revision history for this message
Thomas Danhorn (tdanhorn) wrote :

I can confirm this for a fresh install of Lucid (and ugene) - exactly the same message.

Revision history for this message
Thomas Danhorn (tdanhorn) wrote :

BTW, I installed the 1.6.2 version of ugene (for Karmic) from the UniPro website (amd_64 deb files) in Lucid, and it start just fine (have not tested it thoroughly, though). This may be a good work-around and help in pinning down the issue. Ivan - can you make an official "Lucid" version on your PPA? This would make the installation of 1.6.2 even easier in Lucid. Thanks for a very useful program!

Revision history for this message
Ivan Efremov (iefremov) wrote :

We are working on this problem. This bug is caused by updated Qt in Lucid.

And yes, the most convenient way to workaround this is to install updated UGENE from our PPA
https://launchpad.net/~iefremov/+archive/ppa

We will prepare Lucid version in the next few days.

Ivan Efremov (iefremov)
Changed in ugene (Ubuntu):
status: New → Confirmed
Ivan Efremov (iefremov)
description: updated
Changed in ugene (Ubuntu):
status: Confirmed → Fix Released
Revision history for this message
xtknight (xt-knight) wrote :

still broken

andy@mattes18:~/Desktop$ sudo apt-get install ugene
andy@mattes18:~/Desktop$ ugene
/usr/lib/ugene/ugene: symbol lookup error: /usr/lib/ugene/libcore.so.1: undefined symbol: _ZN9QHashData13detach_helperEPFvPNS_4NodeEPvEPFvS1_Ei

Changed in ugene (Ubuntu):
status: Fix Released → New
Revision history for this message
xtknight (xt-knight) wrote :

platform: Lucid 64

Ivan Efremov: your ppa works, but Lucid still has the broken version.

Revision history for this message
Ivan Efremov (iefremov) wrote :

xtknight, I requested the Stable Release Update according to the policy, but looks like nobody cares.

Revision history for this message
xtknight (xt-knight) wrote :

Ivan: Ah yeah, typical. I've been in that position. Thanks for your work. Hopefully it'll get in for Maverick.

Changed in ugene (Ubuntu):
status: New → Confirmed
Revision history for this message
xtknight (xt-knight) wrote :

I subscribed Ubuntu sponsors...and there's no debdiff because this is just a rebuild, I guess.

Revision history for this message
Stefano Rivera (stefanor) wrote :

I've confirmed thisg bug I've uploaded a no-change rebuild to lucid-proposed. Waiting for SRU team to approve the upload.

Changed in ugene (Ubuntu):
assignee: Ivan Efremov (iefremov) → nobody
status: Confirmed → Fix Released
Changed in ugene (Ubuntu Lucid):
importance: Undecided → High
status: New → Fix Committed
Revision history for this message
Martin Pitt (pitti) wrote : Please test proposed package

Accepted ugene into lucid-proposed, the package will build now and be available in a few hours. Please test and give feedback here. See https://wiki.ubuntu.com/Testing/EnableProposed for documentation how to enable and use -proposed. Thank you in advance!

tags: added: verification-needed
Revision history for this message
Ivan Efremov (iefremov) wrote :

Works for me.

Martin Pitt (pitti)
tags: added: verification-done
removed: verification-needed
Revision history for this message
xtknight (xt-knight) wrote :

Thank you for taking care of this bug in a timely manner.

Revision history for this message
Colin Watson (cjwatson) wrote :

Copied to lucid-updates:

ugene (1.5.2+repack-0ubuntu1.1) lucid-proposed; urgency=low

  * No-change rebuild against newer Qt. (LP: #566146)

 -- Stefano Rivera <email address hidden> Sat, 28 Aug 2010 01:10:07 +0200

Changed in ugene (Ubuntu Lucid):
status: Fix Committed → Fix Released
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