A set of integrated tools to process tree data ready for supertree construction.
The STK is a handy box of tools to aid processing of data ready for analysis in programs like PAUP and TNT. It implements the supertree processing protocol proposed by Davis and Hill, 2008 (http://
The software was described in this paper in Biodiversity Data Journal: http://
The aim is to produce a GUI, web-based and command line interface for curating, processing and storing data ready for supertree analysis, all with common functionality. Our data format is a XML file that contains the trees and associated metadata for each tree.
To Install:
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Ubuntu:
You need to add the Supertree Toolkit PPA (https:/
sudo apt-add-repository ppa:fluidity-
sudo apt-add-repository ppa:stk-
sudo apt-get update
sudo apt-get -y install supertree-toolkit
Windows:
Download the setup.exe (right) and install as normal
MacOS X:
Download the STK.dmg (right) and install as normal
To contribute:
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Please contact the development team for advice first, before undertaking a substantial amount of work. All new developments must be done on a branch. Once ready, a merge can be requested and a code review from a member of the team will grant or refuse the request (with comments and advice). Once granted, a merge to the trunk can be performed.
View full history Series and milestones
trunk series is the current focus of development.
All code Code
- Version control system:
- Bazaar
- Programming languages:
- python
All questions Latest questions
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Importing reference file.
Posted
All bugs Latest bugs reported
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Bug #1855866: Error when creating matrix/exporting trees
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Bug #1703354: Taxa substitution failed due to unknown error
Reported -
Bug #1656264: python-graphviz has changed output variables in Ubuntu 16.04
Reported -
Bug #1483640: Error: Failed to create matrix due to unknown error
Reported -
Bug #1413375: Data ind fails if the tree names are not "standard"
Reported
All blueprints Latest blueprints
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New GUI
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