Change log for exonerate package in Ubuntu

exonerate (2.4.0-5build2) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 16:47:09 +1100

Available diffs

• diff from 2.4.0-5build1 to 2.4.0-5build2 (311 bytes)

exonerate (2.4.0-5build1) noble; urgency=medium

  * No-change rebuild against libglib2.0-0t64

 -- Steve Langasek <email address hidden>  Fri, 08 Mar 2024 04:18:13 +0000

Available diffs

• diff from 2.4.0-5 (in Debian) to 2.4.0-5build1 (530 bytes)

exonerate (2.4.0-5) unstable; urgency=medium

  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Update watch file format version to 4.
  * Set field Upstream-Name in debian/copyright.
  * Refer to specific version of license GPL-3+.
  * Remove obsolete field Name from debian/upstream/metadata (already present in
    machine-readable debian/copyright).

 -- Andreas Tille <email address hidden>  Thu, 03 Dec 2020 21:56:27 +0100

Available diffs

• diff from 2.4.0-4 to 2.4.0-5 (1.7 KiB)

exonerate (2.4.0-4) unstable; urgency=medium

  [ Jelmer Vernooij ]
  * Trim trailing whitespace.
  * Use secure copyright file specification URI.

  [ Andreas Tille ]
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target

 -- Andreas Tille <email address hidden>  Sun, 06 Jan 2019 22:02:34 +0100

Available diffs

• diff from 2.4.0-3 to 2.4.0-4 (1.5 KiB)

exonerate (2.4.0-3) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added references to registries.

  [ Helmut Grohne ]
  * make pkg-config macro cross compilation safe
    Closes: #888032

  [ Andreas Tille ]
  * debhelper 11
  * Standards-Version: 4.1.3

 -- Andreas Tille <email address hidden>  Tue, 23 Jan 2018 11:37:37 +0100

Available diffs

• diff from 2.4.0-2 to 2.4.0-3 (1.6 KiB)

exonerate (2.4.0-2) unstable; urgency=medium

  [ Canberk Koç ]
  * Team upload
  * debian/tests: added testsuite
  * debian/rules: changes for testing

  [ Andreas Tille ]
  * cme fix dpkg-control
  
 -- Canberk Koç <email address hidden>  Wed, 18 May 2016 14:11:15 +0200

Available diffs

• diff from 2.4.0-1 to 2.4.0-2 (1.1 KiB)

exonerate (2.4.0-1) unstable; urgency=medium

  * New upstream version
  * Moved packaging from SVN to Git
  * Better hardening

 -- Andreas Tille <email address hidden>  Sun, 20 Mar 2016 12:24:30 +0100

Available diffs

• diff from 2.2.0-7 to 2.4.0-1 (54.6 KiB)

exonerate (2.2.0-7) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream/metadata

  [ Andreas Tille ]
  * debian/upstream/metadata:
     - Took over some detail from tasks file; moved DOI+PMID
       to References
     - Added eprint
  * debian/reference removed in favour of debian/upstream/metadata
  * debian/copyright: Deleted bouncing upstream contact address
  * fixed upstream homepage
  * fix watch file
  * do not maintain duplicated information in debian/upstream/metadata
  * cme fix dpkg-control
  * debhelper 9
  * DEP5
  * fix spelling and manpage syntax issues
  * remove outdated README.Debian

 -- Andreas Tille <email address hidden>  Mon, 11 Jan 2016 09:54:39 +0100

Available diffs

• diff from 2.2.0-6 to 2.2.0-7 (4.8 KiB)

exonerate (2.2.0-6) unstable; urgency=low


  * debian/patches/autoreconf.patch: Removed because not needed
    when using dh-autoreconf

 -- Andreas Tille <email address hidden>  Thu, 12 Jan 2012 11:29:32 +0100

Available diffs

• diff from 2.2.0-3ubuntu1 (in Ubuntu) to 2.2.0-6 (171.3 KiB)

exonerate (2.2.0-3ubuntu1) precise; urgency=low

  * Sync on Debian
  * Use dh-autoreconf instead of aclocal-1.4 to fix FTBFS with --as-needed;
    Debian's autoreconf patch doesn't work with --as-needed
    - update debian/control
    - update debian/rules
  * Disable Debian's autoreconf patch (since we're using dh-autoreconf)
    - update debian/patches/series

Available diffs

• diff from 2.2.0-2ubuntu1 to 2.2.0-3ubuntu1 (173.6 KiB)

exonerate (2.2.0-2ubuntu1) precise; urgency=low

  * Add -pthread to LIBS instead of LDFLAGS; fixes FTBFS with --as-needed
    - update configure.in
  * Add automake1.4 to fix FTBFS for missing aclocal-1.4
    - update debian/control
 -- Micah Gersten <email address hidden>   Sun, 11 Dec 2011 03:35:14 -0600

Available diffs

• diff from 2.2.0-2 to 2.2.0-2ubuntu1 (896 bytes)

exonerate (2.2.0-2) unstable; urgency=low

  [ Charles Plessy ]
  * debian/control:
    - Enhances bioperl-run instead of bioperl.
    - Incremented Standards-Version to reflect conformance with Policy
      3.8.3 (no changes needed).

  [ Andreas Tille ]
  * debian/control
    - s/libreadline5-dev/libreadline-dev/
    - s/Debian-Med/Debian Med/

 -- Ubuntu Archive Auto-Sync <email address hidden>   Thu,  05 Nov 2009 05:57:30 +0000

Available diffs

• diff from 2.2.0-1 to 2.2.0-2 (1.2 KiB)

exonerate (2.2.0-1) unstable; urgency=low

  * New upstream release (LP: #285237).
    This version includes fixes for problems with excessive memory consumption
    when compiled against glib-2, and fixes a bug with using exonerate-server
    with unmasked sequences. 

Available diffs

• diff from 2.0.0-1 to 2.2.0-1 (42.8 KiB)

exonerate (2.0.0-1) unstable; urgency=low

  [ David Paleino ]
  * Updated to Standards-Version 3.8.0 (no changes needed)

  [ Charles Plessy ]
  * New upstream release (Closes: #479323)
    Quoting the upstream changelog:
    o Modified exonerate to work in Client:Server mode
    o Fixed --refine to work with SDP alignments
    o Disabled codegen warnings from bootstrapper during compilation
    o Added --geneticcode option for using alternative genetic codes
    o Added --splice5 and --splice3 to allow alternative splice site PSSMs
    o Fixed several bugs when scanning query sequences (eg. --forcescan query)
    o Fixed to report query on forward strand whenever possible.
    o Fixed --ryo sequence dumping with --bestn
    o Fixed a bug with missing seeds when using --annotation
    o Changed license to GPLv3
    o Added protein2dna:bestfit and protein2genome:bestfit models
      (works with exhaustive alignment only)
  * Updated my email address.
  * debian/control:
    - Building on glib-2.0 instead of 1.2.
    - Added a build dependancy on libreadline5-dev.
    - Augmented the long description and changed the short.
    - Added a build dependency on CDBS.
  * debian/copyright made machine-readable.
  * debian/rules switched to cdbs.
  * debian/dirs: removed.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Fri,  04 Jul 2008 08:43:54 +0100

Available diffs

• diff from 1.4.0-1 to 2.0.0-1 (130.0 KiB)

exonerate (1.4.0-1) unstable; urgency=low

  * Initial release (Closes: #431404).

 -- Ubuntu Archive Auto-Sync <email address hidden>   Sun,  28 Oct 2007 18:40:23 +0000